FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33616334
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC738910.21980683556987504No Hit
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC640950.1906662398106825No Hit
GGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCG591380.17592043201379426TruSeq Adapter, Index 3 (97% over 36bp)
GGCCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGAC533640.158744258074066No Hit
GGGCACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGA510860.15196779041997857No Hit
GGGCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACAC456310.13574055993137146No Hit
GGGCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCT413840.12310682063070887No Hit
GGGCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACC403770.12011125305930147No Hit
GGGCGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCCGCGCGCTTCCCTC365400.10869715894660018No Hit
GGGCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAG351380.10452656735264469No Hit
GGGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCC346460.10306299312709115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)