FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008101716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26654195
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC1282670.48122631353150974No Hit
GGGTCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGC1098840.41225780782349647No Hit
GGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCG957710.3593092944656554TruSeq Adapter, Index 3 (97% over 36bp)
GGGCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTT732480.2748085245118076No Hit
GGCCCCCCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTT719320.2698712153940496No Hit
GGGCGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCCGCGCGCTTCCCTC610410.22901085551448844No Hit
GGCCCCCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTC609200.2285568932019894No Hit
GGGCGGCCCTAACAGGGCTCTCCCTGAGCTTCGGGGAGGTGAGTTCCCAGA387600.1454180101856387No Hit
GGGCGTCGCGCGCGCGTCCGCTGGGGGCGGGGAGCGGTCGGGCGGCGGCGG357200.13401267605343176No Hit
GGCCGGAGGGCGAGGCCCGCGGCGGCGCCGCCGCCGCCGCGCGCTTCCCTC311160.1167395976505762No Hit
CGGCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTT298440.11196736573736331No Hit
GGCCACCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTT297770.1117159981758969No Hit
GGGCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAG297440.11159219027248807No Hit
GGCCCGCGACGCGGCGCGTGCGCGGGCGGGGCCCGCGTGCCCGTTCGTTCG296260.1111494832239353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)