FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008101926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83383309
Sequences flagged as poor quality0
Sequence length90
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTTGGGTC59440277.128557347130466No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC26290463.1529643420603515No Hit
GTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTTGGGTCT12134841.4553080401258722No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCC11222311.34587007095149No Hit
CTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTTGGGTCTTC10012321.200758295644036No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC8873801.0642177800835417No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCC3946190.47325898280194184No Hit
TCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTTGGGTCTT1793060.21503823984725767No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGGGTATG1603490.19230347406817352No Hit
CTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTTGGGTCTTCCT1528090.18326089697399753No Hit
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCT1366620.16389611019154926No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGCTTC1190540.14277917418700664No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGATTC970570.11639859483149079No Hit
TCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTTGGGTCTTCC930970.11164944293587582No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAATG900230.1079628538128656No Hit
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTC890690.10681873994710381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)