FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008101958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36485697
Sequences flagged as poor quality0
Sequence length90
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC31141658.535303573890888No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCC13958483.825740261999106No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC13919863.8151552922231415No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCC6599371.8087553596687491No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTC2427250.6652606910592938No Hit
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCT1692420.4638584813111834No Hit
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTC1114600.30548957307845864No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAATG972010.26640850522877496No Hit
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCT804780.22057410606682393No Hit
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTC544950.14935989848295894No Hit
GTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCT534540.14650672563552783No Hit
CTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCTTC448760.12299614284468788No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGGGCTGG391470.10729409938365711No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATTTGGAATG368330.1009518880782242No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAGGCCTG367280.10066410407344006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)