FastQCFastQC Report
Sun 9 Jul 2023
EGAF00008101990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30613499
Sequences flagged as poor quality0
Sequence length90
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTC575585718.801695944655002No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC27555059.000947588513158No Hit
GTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCT12562464.103568821061584No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCC12377214.043056300098201No Hit
CTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCTTC10405053.3988437584348006No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC8653272.826619067621117No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCC4065231.3279207319620667No Hit
TCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCTT1818150.5939046693094442No Hit
CTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCTTCCT1635090.5341075190392317No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATTGGGTTTC1574080.514178402148673No Hit
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCT1489780.4866415302608827No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAATG1171330.3826187917950836No Hit
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTC1015630.3317588753902323No Hit
TCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCTTCC972060.3175265917822722No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTGC535010.17476277376852611No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATTTGGCTTC516860.16883401665389505No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTA495780.1619481654155247No Hit
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCT486010.1587567628254451No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATACGGATGA410610.13412710517017346No Hit
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTC358330.11704967145375966No Hit
GTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATTGGGTTTCA309710.10116778875880865No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGAAA307170.10033808941604487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)