FastQCFastQC Report
Sat 11 May 2024
EGAF00008101992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008101992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29881417
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length90
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTC562409518.82137985624979No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC26567728.891050916360491No Hit
GTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCT12286394.1117159872304585No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCC11944433.997276969830447No Hit
CTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCTTC10172783.404383399890307No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC8439442.8243105070954297No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCC3931671.315757549248752No Hit
TCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCTT1780630.5958987821762268No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATTGGGTTTC1622750.5430632690544762No Hit
CTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCTTCCT1597990.5347771827554229No Hit
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCT1438430.4813794472999724No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAATG1118970.37447019329772746No Hit
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTC976910.3269289404849844No Hit
TCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATCTTGGGTCTTCC943620.31578823721779997No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTGC510610.17087877726815967No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATTTGGCTTC495360.165775270965229No Hit
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCT469780.15721476662234593No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTA461780.15453751741425115No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATACGGATGA405460.13568968298926384No Hit
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTC350670.11735387247532472No Hit
GTCTCTCAGCTGGTACACGGCAGGGTCAGGCTTCTGGATATTGGGTTTCA322560.10794668807038169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)