FastQCFastQC Report
Wed 12 Jul 2023
EGAF00008107281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008107281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17443799
Sequences flagged as poor quality0
Sequence length259
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTCTCCACATCACTGCAGCCCAGACTGGTGATACAGGCCTCTACCTC3687572.113971847531607No Hit
AATGGCCTCACTTGATACCAAAGCCCGTCTCAGCACCCTCCACATCACAG3045071.7456461175687703No Hit
AAAGTGCCAAGCACCTCTCTCTGCACATTGTGCCCTCCCAGCCTGGAGAC2651201.5198524128832258No Hit
GCAGACACAAAGCAAAGCTCTCTGCACATCACAGCCTCCCAGCTCAGCGA2353981.3494652168372268No Hit
GCCAGCCAGTATGTTTCTCTGCTCATCAGAGACTCCCAGCCCAGTGATTC2310831.3247286327938084No Hit
CACCTGACGAAACCCTCAGCCCATATGAGCGACGCGGCTGAGTACTTCTG2302431.319913167997407No Hit
TCTGCAAATTGCAGCTACTCAACCTGGAGACTCAGCTGTCTACTTTTGTG2257501.2941561640328463No Hit
GGTTTACAGCACAGGTCGATAAATCCAGCAAGTATATCTCCTTGTTCATC2096761.2020088055359959No Hit
TTTCAGCATCCTGAACATCACAGCCACCCAGACCGGAGACTCGGCCATCT1978231.134059157641062No Hit
TCCACTTGGAGAAAGGCTCAGTTCAAGTGTCAGACTCAGCGGTGTACTTC1924621.1033261733868867No Hit
AGAAAGTCCAGTACCTTGATCCTGCACCGTGCTACCTTGAGAGATGCTGC1850801.0610074101404172No Hit
GCCAACCTTGTCATCTCCGCTTCACAACTGGGGGACTCAGCAATGTATTT1743050.9992376087341983No Hit
GCCAGCCAGTATATTTCCCTGCTCATCAGAGACTCCAAGCTCAGTGATTC1708390.9793680837528568No Hit
GGAAACCCTCAGTCCATATAAGCGACACGGCTGAGTACTTCTGTGCTGTG1664790.9543735283810596No Hit
GAAACCTCCTTCCACCTGACGAAACCCTCAGCCCATATGAGCGACGCGGC1595190.9144739629251633No Hit
GCCAACCTTGTCATCTCCGCTTCACAACTGGGGGACTCAGCAATGTACTT1538460.8819523774608959No Hit
GACCTTAACAAAGGCGAGACATCTTTCCACCTGAAGAAACCATTTGCTCA1452980.8329492904613267No Hit
TTATCCCTGCCGACAGAAAGTCCAGCACTCTGAGCCTGCCCCGGGTTTCC1410610.8086598567204312No Hit
CTGTACCTTACGGCCTCCCAGCTCAGTTACTCAGGAACCTACTTCTGCGG1262410.7237012992410655No Hit
GACTGTCGCTACGGAACGCTACAGCTTATTGTACATTTCCTCTTCCCAGA1228990.7045426285868118No Hit
GTTCAGCATCCTGAACATCACAGCCACCCAGACCGGAGACTCGGCCATCT1102100.6318004466802214No Hit
AAGGATAAACATCTGTCTCTGCGCATTGCAGACACCCAGACTGGGGACTC1007090.5773341002152111No Hit
GTATCCCTGCCGACAGAAAGTCCAGCACTCTGAGCCTGCCCCGGGTTTCC911600.5225925843332636No Hit
GCCAAACATTTCTCCCTGCACATCACAGAGACCCAACCTGAAGACTCGGC870780.49919171850122784No Hit
GGAACTTCCAGAAATCCACCAGTTCCTTCAACTTCACCATCACAGCCTCA818990.46950208495293944No Hit
GCCAGCCAGTATATTTCCCTGCTCATCAGAGACTCCCAGCCCAGTGATTC710480.40729659863657No Hit
GTCACGCTTGACACTTCCAAGAAAAGCAGTTCCTTGTTGATCACGGCTTC551680.3162613831998408No Hit
GCCAGCCAGTATGTTTCTCTGCTCATCAGAGACTCCAAGCTCAGTGATTC509450.292052207205552No Hit
CTTGTGAGCGACTCCGCTTTGTACTTCTGTGCTGTGAGAGACGAACCTGC487730.27960079108914293No Hit
GCTGCAAATTGCAGCTACTCAACCTGGAGACTCAGCTGTCTACTTTTGTG458170.26265494116275934No Hit
CCTTCAGTCTCAAGATCTCAGACTCACAGCTGGGGGATGCCGCGATGTAT449310.2575757723417932No Hit
CACATCACAGCCACCCAGACTACAGATGTAGGAACCTACTTCTGTGCAGG447840.25673306600242296No Hit
TTGTTTCATATCACAGCCTCCCAGCCTGCAGACTCAGCTACCTACCTCTG434930.2493321552260491No Hit
TCATCACAGAAGACAGAAAGTCCAGCACCTTGATCCTGCCCCACGCTACG396150.2271007594159965No Hit
GCCACTTGGAGAAAGGCTCAGTTCAAGTGTCAGACTCAGCGGTGTACTTC382480.219264163729472No Hit
GTGTTTCATATCACAGCCTCCCAGCCTGCAGACTCAGCTACCTACCTCTG357590.2049954829220401No Hit
CTGTACCTTACGGCCTCCCAGCTCAGTTACTCAGGAACCTACCTCTGCGG345390.19800159357488584No Hit
GTTCTCTCCACATCACTGCAGCCCAGACTGGTGATACAGGCCTCTACACC344040.1972276795897499No Hit
GAAGGAGCTCCAGATGAAAGACTCTGCCTCTTACCTCTGTGCTGTGTCGG323130.18524061186442242No Hit
AGAAAGTCCAGTACCTTGATCCTGCACCGTGCTACTTGAGAGATGCTGCT290930.16678133014488417No Hit
CTTGTGAGCGACTCCGCTTTGTACTTCTGTGCTGTGAGAGAGGCGGACAC251660.14426903222170814No Hit
GACCTGACGAAACCCTCAGCCCATATGAGCGACGCGGCTGAGTACTTCTG217880.12490398450475153No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG177490.101749624608722No Hit
GCCAACCTTGTCATCTCCGCTTCACAACCGGGGGACTCAGCAATGTACTT175030.10033938134691876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)