FastQCFastQC Report
Wed 12 Jul 2023
EGAF00008107283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008107283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6236854
Sequences flagged as poor quality0
Sequence length259
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAAGTCCAGTACCTTGATCCTGCACCGTGCTACCTTGAGAGATGCTGC5503138.823567138175752No Hit
GTTCTCTCCACATCACTGCAGCCCAGACTGGTGATACAGGCCTCTACCTC3789906.076621322224314No Hit
AAAGTGCCAAGCACCTCTCTCTGCACATTGTGCCCTCCCAGCCTGGAGAC1576262.52733188880163No Hit
GCCAACCTTGTCATCTCCGCTTCACAACTGGGGGACTCAGCAATGTACTT1551412.4874880829341204No Hit
AAGGATAAACATCTGTCTCTGCGCATTGCAGACACCCAGACTGGGGACTC1397652.240953532021112No Hit
GCCAGCCAGTATGTTTCTCTGCTCATCAGAGACTCCCAGCCCAGTGATTC1286642.062963154179976No Hit
GCCAGCCAGTATATTTCCCTGCTCATCAGAGACTCCAAGCTCAGTGATTC1114381.7867662125808943No Hit
TCCACTTGGAGAAAGGCTCAGTTCAAGTGTCAGACTCAGCGGTGTACTTC986801.5822079529198536No Hit
TCTGCAAATTGCAGCTACTCAACCTGGAGACTCAGCTGTCTACTTTTGTG852271.3665062545956663No Hit
TTTCAGCATCCTGAACATCACAGCCACCCAGACCGGAGACTCGGCCGTCT611370.9802538266889044No Hit
TTATCCCTGCCGACAGAAAGTCCAGCACTCTGAGCCTGCCCCGGGTTTCC554530.8891181355215305No Hit
CTGTACCTTACGGCCTCCCAGCTCAGTTACTCAGGAACCTACTTCTGCGG467090.7489192467869218No Hit
GCCAGCCAGTATATTTCCCTGCTCATCAGAGACTCCCAGCCCAGTGATTC394450.6324502706011716No Hit
GCCAACCTTGTCATCTCCGCTTCACAACTGGGGGACTCAGCAATGTATTT345340.553708648623168No Hit
CACCTGACGAAACCCTCAGCCCATATGAGCGACGCGGCTGAGTACTTCTG336390.5393584650209865No Hit
GCCAGCCAGTATGTTTCTCTGCTCATCAGAGACTCCAAGCTCAGTGATTC328330.5264352829166756No Hit
AATGGCCTCACTTGATACCAAAGCCCGTCTCAGCACCCTCCACATCACAG274170.4395966299676086No Hit
GTATCCCTGCCGACAGAAAGTCCAGCACTCTGAGCCTGCCCCGGGTTTCC270200.4332312412636242No Hit
TTGTTTCATATCACAGCCTCCCAGCCTGCAGACTCAGCTACCTACCTCTG245750.3940287843839218No Hit
CCTTCAGTCTCAAGATCTCAGACTCACAGCTGGGGGATGCCGCGATGTAT241030.38646086632779925No Hit
GGTTTACAGCACAGGTCGATAAATCCAGCAAGTATATCTCCTTGTTCATC239940.3847131903360252No Hit
GCCAAACATTTCTCCCTGCACATCACAGAGACCCAACCTGAAGACTCGGC232530.3728322003369006No Hit
CATACAGGAAAAGCACAGCTCCCTGCACATCACAGCCTCCCATCCCAGAG216330.34685756633071735No Hit
GTTCTCTTCATCGCTGCTCATCCTCCAGGTGCGGGAGGCAGATGCTGCTG215460.34546263228223717No Hit
TCATCACAGAAGACAGAAAGTCCAGCACCTTGATCCTGCCCCACGCTACG210350.3372693989630028No Hit
GAAACCTCCTTCCACCTGACGAAACCCTCAGCCCATATGAGCGACGCGGC210310.33720526406422213No Hit
GTTCAGCATCCTGAACATCACAGCCACCCAGACCGGAGACTCGGCCGTCT196080.3143892738229883No Hit
GCAGACACAAAGCAAAGCTCTCTGCACATCACAGCCTCCCAGCTCAGCGA187720.30098507997782215No Hit
GGAACTTCCAGAAATCCACCAGTTCCTTCAACTTCACCATCACAGCCTCA169270.27140285791522456No Hit
GCTGCAAATTGCAGCTACTCAACCTGGAGACTCAGCTGTCTACTTTTGTG156980.25169741026485465No Hit
GACTGTCGCTACGGAACGCTACAGCTTATTGTACATTTCCTCTTCCCAGA154410.24757674301819477No Hit
GTGTTTCATATCACAGCCTCCCAGCCTGCAGACTCAGCTACCTACCTCTG153800.2465986858117891No Hit
GGAAACCCTCAGTCCATATAAGCGACACGGCTGAGTACTTCTGTGCTGTT125150.20066206456011318No Hit
GTCACGCTTGACACTTCCAAGAAAAGCAGTTCCTTGTTGATCACGGCTTC123920.19868991642260667No Hit
TTTCAGCATCCTGAACATCACAGCCACCCAGACCGGAGACTCGGCCATCT113720.1823355172335283No Hit
GACCTTAACAAAGGCGAGACATCTTTCCACCTGAAGAAACCATTTGCTCA113710.18231948350883315No Hit
GAAGGAGCTCCAGATGAAAGACTCTGCCTCTTACCTCTGTGCTGTGAGGG109070.174879835250272No Hit
GGAAACCCTCAGTCCATATAAGCGACACGGCTGAGTACTTCTGTGCTCCG98600.15809252549442396No Hit
CCTTCAGTCTCAAGATCTCAGACTCACAGCTGGGGGACACTGCGATGTAT96900.15536679229624423No Hit
GGAAACCCTCAGTCCATATAAGCGACACGGCTGAGTACTTCTGTGCTGTG92960.14904950476634535No Hit
AGAAGGAAAGCTTTCTGCACATCACAGCCCCTAAACCTGAAGACTCAGCC87280.13994234913948603No Hit
GCCACTTGGAGAAAGGCTCAGTTCAAGTGTCAGACTCAGCGGTGTACTTC75350.12081411557814245No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74660.11970778857417538No Hit
CTTGTGAGCGACTCCGCTTTGTACTTCTGTGCTGTGAGAGACAGCTGGGG70430.11292552302811641No Hit
GTTCTCTCCACATCACTGCAGCCCAGCCTGGTGATACAGGCCTCTACCTC65930.10571034691528773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)