FastQCFastQC Report
Wed 12 Jul 2023
EGAF00008107289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008107289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7025970
Sequences flagged as poor quality0
Sequence length259
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTCTCCACATCACTGCAGCCCAGACTGGTGATACAGGCCTCTACCTC2412273.4333622261410164No Hit
GCCAGCCAGTATGTTTCTCTGCTCATCAGAGACTCCCAGCCCAGTGATTC1209211.7210577329535994No Hit
GCCAACCTTGTCATCTCCGCTTCACAACTGGGGGACTCAGCAATGTACTT1014061.443302490616954No Hit
GCCAACCTTGTCATCTCCGCTTCACAACTGGGGGACTCAGCAATGTATTT879381.251613656192668No Hit
GCAGACACAAAGCAAAGCTCTCTGCACATCACAGCCTCCCAGCTCAGCGA859691.2235890560306975No Hit
CACCTGACGAAACCCTCAGCCCATATGAGCGACGCGGCTGAGTACTTCTG837711.1923051194354657No Hit
TCTGCAAATTGCAGCTACTCAACCTGGAGACTCAGCTGTCTACTTTTGTG745271.0607360976491502No Hit
GCCAGCCAGTATATTTCCCTGCTCATCAGAGACTCCAAGCTCAGTGATTC743301.0579322143419343No Hit
AAAGTGCCAAGCACCTCTCTCTGCACATTGTGCCCTCCCAGCCTGGAGAC723761.0301211078327976No Hit
AGAAAGTCCAGTACCTTGATCCTGCACCGTGCTACCTTGAGAGATGCTGC710381.0110774740000315No Hit
GAAACCTCCTTCCACCTGACGAAACCCTCAGCCCATATGAGCGACGCGGC656360.934191293159521No Hit
GGAAACCCTCAGTCCATATAAGCGACACGGCTGAGTACTTCTGTGCTGTG621330.8843334087677573No Hit
TCCACTTGGAGAAAGGCTCAGTTCAAGTGTCAGACTCAGCGGTGTACTTC596400.8488507636667962No Hit
GACTGTCGCTACGGAACGCTACAGCTTATTGTACATTTCCTCTTCCCAGA383950.5464725867033307No Hit
GCCAGCCAGTATATTTCCCTGCTCATCAGAGACTCCCAGCCCAGTGATTC383030.5451631589659506No Hit
AAGGATAAACATCTGTCTCTGCGCATTGCAGACACCCAGACTGGGGACTC369930.526518046618474No Hit
GCCAAACATTTCTCCCTGCACATCACAGAGACCCAACCTGAAGACTCGGC365910.5207964167225309No Hit
GGTTTACAGCACAGGTCGATAAATCCAGCAAGTATATCTCCTTGTTCATC333180.47421210167421723No Hit
TTATCCCTGCCGACAGAAAGTCCAGCACTCTGAGCCTGCCCCGGGTTTCC262290.37331500134501No Hit
GACCTTAACAAAGGCGAGACATCTTTCCACCTGAAGAAACCATTTGCTCA234600.3339040730319087No Hit
GTATCCCTGCCGACAGAAAGTCCAGCACTCTGAGCCTGCCCCGGGTTTCC223940.31873179077052705No Hit
GCCAGCCAGTATGTTTCTCTGCTCATCAGAGACTCCAAGCTCAGTGATTC211730.3013534074298638No Hit
GGAACTTCCAGAAATCCACCAGTTCCTTCAACTTCACCATCACAGCCTCA210830.30007244551286155No Hit
GTTCTCTTCATCGCTGCTCATCCTCCAGGTGCGGGAGGCAGATGCTGCTG210470.2995600607460607No Hit
GCTGCAAATTGCAGCTACTCAACCTGGAGACTCAGCTGTCTACTTTTGTG206990.29460700800031886No Hit
GGAAACCCTCAGTCCATATAAGCGACACGGCTGAGTACTTCTGTGCTATA196920.280274467440083No Hit
CCTTCAGTCTCAAGATCTCAGACTCACAGCTGGGGGATGCCGCGATGTAT190180.2706814859727554No Hit
TTGTTTCATATCACAGCCTCCCAGCCTGCAGACTCAGCTACCTACCTCTG182640.2599498716903147No Hit
GACCTGACGAAACCCTCAGCCCATATGAGCGACGCGGCTGAGTACTTCTG180270.2565766719755422No Hit
GCCACTTGGAGAAAGGCTCAGTTCAAGTGTCAGACTCAGCGGTGTACTTC174470.24832158406597238No Hit
GGAAACCCTCAGTCCATATAAGCGACACGGCTGAGTACTTCTGTGCTGTT170740.2430127085655077No Hit
GTGTTTCATATCACAGCCTCCCAGCCTGCAGACTCAGCTACCTACCTCTG153470.21843247266925422No Hit
GTCACGCTTGACACTTCCAAGAAAAGCAGTTCCTTGTTGATCACGGCTTC151120.21508773877485957No Hit
AATGGCCTCACTTGATACCAAAGCCCGTCTCAGCACCCTCCACATCACAG149620.21295280224652252No Hit
GTTCTCTCCACATCACTGCAGCCCAGACTGGTGATACAGGCCTCTACCTT122450.1742819852632448No Hit
CTTGTGAGCGACTCCGCTTTGTACTTCTGTGCTGTGACGGGCTGGGGGAA110450.15720249303654868No Hit
AGAAGGAAAGCTTTCTGCACATCACAGCCCCTAAACCTGAAGACTCAGCC105140.14964481772623567No Hit
GACCTCAAATGGAAGACTGACTGCTCAGTTTGGTATAACCAGAAAGGACA104430.1486342811028228No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG100250.14268492464385701No Hit
GAAGGAGCTCCAGATGAAAGACTCTGCCTCTTACCTCTGTGCTGTGAAGA92170.13118473321121496No Hit
TCATCACAGAAGACAGAAAGTCCAGCACCTTGATCCTGCCCCACGCTACG91870.13075774590554756No Hit
GTTCTCTCCACATCACTGCAGCCCAGACTGGTGATACAGGCCCCGTTCTG88290.12566236405791656No Hit
TTTCAGCATCCTGAACATCACAGCCACCCAGACCGGAGACTCGGCCGTCT70460.10028508519108394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)