FastQCFastQC Report
Sat 15 Jul 2023
EGAF00008107293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008107293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36425258
Sequences flagged as poor quality0
Sequence length259
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATGAATGTGAGCACCTTGGAGCTGGGGGACTCGGCCCTTTATCTTTGC6467211.7754740405682232No Hit
GAGCTGAATGTGAACGCCTTGTTGCTGGGGGACTCGGCCCTCTATCTCTG4835371.3274772137509636No Hit
GAGCTGAATGTGAACGCCTTGTTGCTGGGGGACTCGGCCCTGTATCTCTG4796471.3167978110134457No Hit
CTGAATGTGAACGCCTTGGAGCTGGACGACTCGGCCCTGTATCTCTGTGC4467081.2263688015607193No Hit
CAAGATCCAGCCTGCAAAGCTTGAGGACTCGGCCGTGTATCTCTGTGCCA3847041.0561462598288254No Hit
TCTACTCTGAAGATCCAGCGCACAGAGCGGGGGGACTCAGCCGTGTATCT3389930.9306536689458726No Hit
AGTTGGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTTAC3389420.9305136562107537No Hit
AGTCAGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTTAC3295320.9046799339074003No Hit
GGCCTAAGGGATCTTTCTCCACCTTGGAGATCCAGCGCACAGAGCAGGGG3164780.8688421644123976No Hit
CTGAGGGATCCGTCTCCACTCTGAAGATCCAGCGCACACAGCAGGAGGAC2040990.5603227299035192No Hit
AGGATCCAGCAGGTAGTGCGAGGAGATTCGGCAGCTTATTTCTGTGCCAG1944740.5338987578344675No Hit
GGGACTCAGCTTTGTATTTCTGTGCCAGCAGCCTCGCCTCGGAGTCAGGC1929910.529827407125023No Hit
GAACTGAACATGAGCTCCTTGGAGCTGGGGGACTCAGCCCTGTACTTCTG1929230.5296407234781975No Hit
ATAGCTCTGAGCTGAATGTGAACGCCTTGGAGCTGGACGACTCGGCCCTG1804540.4954089824154437No Hit
AGCTGAATGTGAACGCCTTGTTGCTGGGGGACTCGGCCCTGTATCTCTGT1784100.4897974916196888No Hit
AGCTGAATGTGAACGCCTTGTTGCTGGGGGACTCGGCCCTCTATCTCTGT1718630.47182369991723877No Hit
CATCATTCTCCACTCTGAAGATCCAGCCCTCAGAACCCAGGGACTCAGCT1539080.4225309811120624No Hit
CATTCTCCACTCTGAAGATCCAGCCCTCAGAACCCAGGGACTCAGCTGTG1527630.41938755794125054No Hit
AACTATAGCTCTGAGCTGAATGTGAACGCCTTGTTGCTGGGGGACTCGGC1408830.3867728267017354No Hit
GATTTCCTCCTCACTCTGGAGTCCGCTACCAGCTCCCAGACATCTGTGTA1332230.36574346295639143No Hit
GCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGCCTCGGAGG1330870.36537009566274037No Hit
AGTCAGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTGAA1139410.3128076676903702No Hit
AGTTGGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTGAA1089460.2990946556919377No Hit
ATAGCTCTGAGCTGAATGTGAACGCCTTGTTGCTGGGGGACTCGGCCCTC1082670.2972305645714301No Hit
ATAGCTCTGAGCTGAATGTGAACGCCTTGTTGCTGGGGGACTCGGCCCTG1068660.2933843323772751No Hit
AACTATAGCTCTGAGCTGAATGTGAACGCCTTGGAGCTGGACGACTCGGC1067190.2929807662584023No Hit
TTCTCTGCAGAGAGGCCTGAGGGATCCATCTCCACTCTGACGATCCAGCG1017330.27929246238969674No Hit
GCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGCCTCGGAGGGGT1000760.27474342117219874No Hit
TATTCCTTCACCTACACACCCTGCAGCCAGAAGACTCGGCCCTGTATCTC949250.2606021349251665No Hit
GGGACTCAGCTTTGTATTTCTGTGCCAGCAGCGTAGGGGACACTGAAGCT899530.24695226592492495No Hit
GCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTGAAGGAAT761040.20893194497071235No Hit
TCTACTCTGAAGATCCAGCGCACACAGCAGGAGGACTCCGCCGTGTATCT690850.18966234913147356No Hit
AGTCAGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGCCTC688210.188937577326151No Hit
AGTTGGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGCCTC651810.17894451152549146No Hit
GCCAGAAGACTCGGCCCTGTATCTCTGTGCCAGCAGCCAAGAGGGGGGAG631070.17325066029731348No Hit
ACCAGACCTCTCTGTACTTCTGTGCCAGCAGTTTAGTTGCAGCCGACGAT617920.16964052800943785No Hit
GCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTGAAGGAATGGG602500.16540720178289472No Hit
TCAGGGGACACAGCACTGTATTTCTGTGCCAGCAGCCGAACGAGGGACCT571090.15678406450820473No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG570570.15664130642533816No Hit
GCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGCTCGACAGG541240.14858920148211444No Hit
AGCTGAATGTGAACGCCTTGTTGCTAGGGGACTCGGCCCTGTATCTCTGT521590.1431945931584067No Hit
AGCTGAATGTGAACGCCTTGTTGCTAGGGGACTCGGCCCTCTATCTCTGT512890.1408061406181392No Hit
CTGAATGTGAACGCCTTGGAGCTGGGGGACTCGGCCCTTTATCTTTGCGC508460.13958995156602597No Hit
GCCAGAAGACTCGGCCCTGTATCTCTGTGCCAGCAGCCAAGACGGAGGGG489230.13431064784771052No Hit
GCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTTACGAGGG487980.13396747937928127No Hit
GCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTTACTCGAC456970.12545415601448862No Hit
GCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCCAGCAGTGCGCAGG449650.12344456146336699No Hit
GCCAGAAGACTCGGCCCTGTATCTCTGTGCCAGCAGCTTGAGACTAGCGG448440.12311237438592747No Hit
GCCAGAAGACTCGGCCCTGTATCTCTGCGCCAGCAGTGAAGACGGGGCGA447720.12291470934811224No Hit
GCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTGACACAGT426680.11713849768751124No Hit
GCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTGATCAGGG424980.11667178857044747No Hit
GCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTTACGGCCC421800.11579876798676347No Hit
GCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGCTCGACAGGGGC415920.11418450351127231No Hit
GCCAGAAGACTCGGCCCTGTATCTCTGTGCCAGCAGCCAGGACATTAGGG412780.11332246431857806No Hit
GCCAGAAGACTCGGCCCTGTATCTCTGTGCCAGCAGCCAAGATTATCAGA412610.11327579340687167No Hit
AGTTGGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTCCA404610.11107951520892455No Hit
GCCAGAAGACTCGGCCCTGTATCTCTGTGCCAGCAGCCAAGGGGCCGCTC400630.10998686680544582No Hit
AACCAGACATCTATGTACCTCTGTGCCAGCAGTTTAAGTCTAGAGGCCTA398470.1093938716920001No Hit
TAGACTCCACTCTCAAGATCCAGCCTGCAAAGCTTGAGGACTCGGCCGTG396010.10871851614613136No Hit
GCTACTCTGAAGATCCAGCGCACAGAGCGGGGGGACTCAGCCGTGTATCT385100.10572334175368092No Hit
CAGCAGAGATGCCTGATGCAACTTTAGCCACTCTGAAGATCCAGCCCTCA377860.10373570998453874No Hit
GCCAGAAGACTCGGCCCTGTATCTCTGTGCCAGCAGCCAAGGAACAGGGA374390.10278307431617918No Hit
GCTGCTCCCTCCCAAACATCTGTGTACTTCTGTGCCAGCAGCCTCGGAGG374260.10274738479546253No Hit
GGGACTCAGCTTTGTATTTCTGTGCCAGCAGCTTAGAATCCTCGATGAAC371080.10187436421177855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)