FastQCFastQC Report
Fri 30 Jun 2023
EGAF00008109066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008109066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43177977
Sequences flagged as poor quality0
Sequence length150
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC2651520.6140908361686329No Hit
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC1469800.3404050171225021No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1250850.2896962958686091No Hit
GCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCG1217430.28195623894097677No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1200900.2781278983959809No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1146240.2654686670475553No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA1127860.2612118673369065No Hit
GGGGTCTTTAAACCTCCGCGCCGGAACGCGCTAGGTACCTGGACGGCGGG853790.19773737894204724No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA828200.19181074648309715No Hit
CTCGCTATGTTGCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC789290.18279920803144623No Hit
GGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGC780890.18085377181983306No Hit
CCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC757050.17533243857163572No Hit
GCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTT743690.1722382685969748No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT666730.15441436730581426No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG638370.14784620409612984No Hit
CCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGG629420.14577338813256582No Hit
GCGGGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCG549280.1272130002755803No Hit
GTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGT539060.1248460528847843No Hit
TGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGA528040.12229382585478704No Hit
GGCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGC522120.12092275652469776No Hit
GGGGGAAGAAGAGGATCGGCGGGCGGCGGGCGGGGAAGAGGGCACAGACG518980.12019553394083285No Hit
GGGGTCTCGCTATGTTGCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCG513950.11903058820935497No Hit
CGGCGGGGGGGCGGACGAGGAGGCGGGGGAGGGGACCGGCGTCCGGCCCC504130.11675628063815958No Hit
GGGGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGCGCCGGCCCGAC500820.11598968613096439No Hit
CAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGCCT494920.11462324879185515No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC492370.11403266994190117No Hit
GGGGAAGAAGAGGATCGGCGGGCGGCGGGCGGGGAAGAGGGCACAGACGG490390.11357410283487805No Hit
GGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCG486990.11278666436827275No Hit
GGGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGG483160.11189963809559675No Hit
CTCGTCTCACTCAAACCGCCTCGAACCCCACACCGACGAGCTCCCTCAGG482420.1117282544293356No Hit
GAGCGGGTCGCTACGGCAGCGCTACCATAACGGAGGCAGAGACAGAGGCG460150.1065705324730707No Hit
GCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGCC450170.10425916897403509No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT447790.10370796204741135No Hit
GGGGCACGGGCCGGGGGCGGGACGGGCGCCGCACGCCCCGACCCGTCTCC445610.10320307503058793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)