FastQCFastQC Report
Thu 9 May 2024
EGAF00008115883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7462435
Total Bases813.4 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC556350.7455341319555883No Hit
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC527170.7064316138097015No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC438740.5879314191681402No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT320700.42975248695633533No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC299080.40078071031774476No Hit
CGGCCCCCCATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGAT252150.33789239035247876No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT212520.28478640014954903No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC204590.2741598419282714No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTAGGGACCTGTATGAATGGCTCC199060.26674939212200843No Hit
CGGCCCCCCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG180770.2422399659092508No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCGCTAAACCTAGCCCCAAACCCAC177000.23718799560733195No Hit
ATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTT157190.21064170073173166No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG151050.2024138233699858No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT106760.14306322266123592No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATAGGTTTGGTCCTAGCCTTTCT103840.1391502907563014No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG89620.12009484839733947No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG89500.11993404297658875No Hit
CGGCCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGA81160.10875806623441275No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG77250.1035184896082847No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTACCTGGTTGATCCTGCCAGTAG75200.10077139700379299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)