FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008115884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7462435
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC501540.6720862560276907No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC429210.575160788670186No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG272490.36514890916972814No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC236680.3171618915273634No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT230510.3088938128104298No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC188360.25241090877173467No Hit
CGGCCCCCCATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGAT186490.24990502429836908No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC161010.2157606732922967No Hit
CGGCCCCCCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG149820.2007655678072908No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT134490.18022267530638458No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTAGGGACCTGTATGAATGGCTCC112720.1510498918918557No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG101820.13644339950699738No Hit
CGGCCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGA84580.11334102072580866No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT81780.10958889424162489No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG74940.10042298525883309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)