FastQCFastQC Report
Wed 8 May 2024
EGAF00008115887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6416698
Total Bases699.4 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC356620.5557687146878347No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC354760.5528700275437617No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT272530.424720003964656No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC113170.1763679699434195No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG107700.16784333624552691No Hit
TGGCAACCTGGAACAAAAGTCCTGATCCAGTAGTCACACTTCTTTTTCCT68510.10676830980669498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)