FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008115888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6416698
Sequences flagged as poor quality0
Sequence length109
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC270750.4219459915364569No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC269380.41981093702711275No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT171580.26739609687100746No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG137010.2135210352739057No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG110490.17219136696163664No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC92950.14485643550623703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)