FastQCFastQC Report
Wed 8 May 2024
EGAF00008115891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6173113
Total Bases672.8 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC248340.40229297600740505No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC146440.2372222896292357No Hit
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC129070.2090841363182563No Hit
TTTTTTCTCTTTGAAAGATAGAGATTAATACAACTACTTAAAAAATATAG125820.20381936957901145No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT96590.15646886749035696No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT64810.10498754842167962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)