FastQCFastQC Report
Fri 10 May 2024
EGAF00008115892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6173113
Total Bases672.8 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC212540.34429954546433866No Hit
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC137740.22312891405033408No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC125710.20364117747399083No Hit
TTTTTTCTCTTTGAAAGATAGAGATTAATACAACTACTTAAAAAATATAG97180.15742462514455835No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT64810.10498754842167962No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62590.10139130775671854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)