FastQCFastQC Report
Wed 8 May 2024
EGAF00008115893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6726013
Total Bases733.1 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC323450.4808941047244482No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC310500.46164049935675117No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC186280.27695456431618554No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT176130.2618639006496122No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG104470.1553223283987111No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC102740.15275022513337397No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG98780.14686263615607048No Hit
CGGCCAGCGAGTCCTCCGCACCATGGCCAAAGAATCTCTGGATATTCTCT96670.14372556223129512No Hit
CCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAAC93000.1382691350730366No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG84160.1251261334166318No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG81070.1205320298964632No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT72040.1071065429103393No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT70520.10484666027258645No Hit
TCACCATGTCTATTCTCAAGATCCATGCCAGGGAGATCTTTGACTCTCGC70280.10448983669820441No Hit
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC69360.10312201299640664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)