FastQCFastQC Report
Fri 10 May 2024
EGAF00008115894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6726013
Total Bases733.1 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC251600.37407004714382797No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC220350.3276086442295012No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG173300.25765635600169073No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC145950.21699333617107192No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG100680.14968748945326155No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT92230.13712432610522757No Hit
CGGCCAGCGAGTCCTCCGCACCATGGCCAAAGAATCTCTGGATATTCTCT73360.10906907256944046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)