FastQCFastQC Report
Thu 9 May 2024
EGAF00008115896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6736287
Total Bases734.2 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTGAGGTGCCAGACTTGGAGCCAGAGAATCGGTCAGGGACCCCTGAG228520.33923732762573805No Hit
AGATACTCGCCCAGCCCAGCCTCCGGGCCACCCAGCCTGTGGAGGTTGGT164410.2440662044238911No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG131290.19489965317689106No Hit
CGGCCCCCCGAGCTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATC112940.16765912735012628No Hit
CGGCCCCCCGGCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACA67530.100248104037135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)