FastQCFastQC Report
Thu 9 May 2024
EGAF00008115897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6865176
Total Bases748.3 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG266270.38785604331192675No Hit
AGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTA242940.35387293785330487No Hit
CGGCCCCCCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG199750.29096122226145404No Hit
GGGCCACTTTTGGTAAGCAGAACTGGCGCTGCGGGATGAACCGAACGCCG198140.2886160529606233No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC160080.23317683333974248No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC129000.18790486944544466No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC96440.14047709774665645No Hit
TGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTC93690.13647137378561017No Hit
ACAGGCCATGTCTTGCAAGTCTATGTTTGGGTTCATTTTTCTTTGCATAA82780.1205795743619683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)