FastQCFastQC Report
Wed 8 May 2024
EGAF00008115898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6865176
Total Bases748.3 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG208350.303488213557817No Hit
AGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTA199840.29109231868199736No Hit
CGGCCCCCCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG166170.2420476911298414No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG111300.16212257340525574No Hit
GGGCCACTTTTGGTAAGCAGAACTGGCGCTGCGGGATGAACCGAACGCCG109650.15971913902862797No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC103080.1501491003289646No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC94240.1372725185778194No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC76040.11076190909016753No Hit
TGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTC74210.10809628187245308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)