FastQCFastQC Report
Wed 8 May 2024
EGAF00008115899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5248312
Total Bases572 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC598311.1400046338708523No Hit
AAAGGTTGGCAATGCCACTCCCCAATGCCACGGCCATAGCAGTAGCACTG238500.45443182493723694No Hit
AGACCTATCCAAGCTCAAGTGGTCCTGTCGAAGTATTTATCACTGAGACT148040.2820716451308535No Hit
CCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAAC138630.264142070822009No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC120640.2298643830625923No Hit
AAGGTTGGCAATGCCACTCCCCAATGCCACGGCCATAGCAGTAGCACTGG93280.17773333597545268No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT81330.15496411036538987No Hit
TGGCCTCCAAAGCATGTGCAGGAGCAAATGGCACCGAGATATTCCTTCTG80980.1542972292805763No Hit
ACAGGCCATGTCTTGCAAGTCTATGTTTGGGTTCATTTTTCTTTGCATAA75560.14397009933860638No Hit
CGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTC75060.14301741207458704No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG73500.1400450278108466No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC71200.13566266639635755No Hit
ATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTT57190.10896836925853493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)