FastQCFastQC Report
Fri 10 May 2024
EGAF00008115900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5248312
Total Bases572 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC420300.8008289141346779No Hit
AAAGGTTGGCAATGCCACTCCCCAATGCCACGGCCATAGCAGTAGCACTG194280.37017616330736436No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC113090.2154788053758999No Hit
AGACCTATCCAAGCTCAAGTGGTCCTGTCGAAGTATTTATCACTGAGACT104130.19840664960467289No Hit
CCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAAC78480.14953379296047947No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74670.14227431600865192No Hit
AAGGTTGGCAATGCCACTCCCCAATGCCACGGCCATAGCAGTAGCACTGG73160.13939720047131343No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT67460.12853656566149269No Hit
TGGCCTCCAAAGCATGTGCAGGAGCAAATGGCACCGAGATATTCCTTCTG64880.12362069937915277No Hit
ACAGGCCATGTCTTGCAAGTCTATGTTTGGGTTCATTTTTCTTTGCATAA54490.10382385803283035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)