FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008115901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6146125
Sequences flagged as poor quality0
Sequence length109
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC269500.43848766499216985No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG242100.39390672985010877No Hit
CGGCCCCCCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCA230990.375830299579003No Hit
AGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTA190540.31001647379446395No Hit
CGGCCCCCCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG176140.2865870772234538No Hit
CGGCCCCCCATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGAT164720.26800626410949985No Hit
GGGCCACTTTTGGTAAGCAGAACTGGCGCTGCGGGATGAACCGAACGCCG161320.26247432325245584No Hit
AGGCCCAGCTGTGGCCGGACAGGGACTGGAAGAGAGGACGCGGTCGAGTA141410.23007992841017713No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC135860.22104984848176695No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT111920.1820984766824625No Hit
TGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTC97720.15899448839716082No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAACACGGGAAACCTCACCCGGCC90980.14802822916878522No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC86080.14005572616892756No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCGCGACCTCAGATCAGACGTGGCG81500.1326038764262035No Hit
ACAGGCCATGTCTTGCAAGTCTATGTTTGGGTTCATTTTTCTTTGCATAA77740.1264862006548842No Hit
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC75790.12331346986922653No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTACCTGGTTGATCCTGCCAGTAG72690.1182696414407452No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATAGGTTTGGTCCTAGCCTTTCT69920.11376273668368281No Hit
AGGCAAGCACCGGAAGCACCCCGGCGGCCGCGGTAATGCTGGTGGTCTGC66670.1084748520409201No Hit
CCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAAC63730.10369135024100552No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTAGGGACCTGTATGAATGGCTCC62670.10196668632675059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)