FastQCFastQC Report
Fri 10 May 2024
EGAF00008115905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6938560
Total Bases756.3 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC182930.2636426001937001No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC137820.19862911036295713No Hit
AGGAGAAAGTGATGGAGTCGGGAAGGAAGTCCTGTGCGAGGCAGCCAACG134680.19410367569063322No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC101500.14628395517225476No Hit
TGGCGGGTCCAGGAGATGGTCACGCTGTCATAGGTGGTCAGGTCTGTGAC94480.13616658211502097No Hit
AGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCC78980.11382765300004612No Hit
AGGCCAGTTGCTACGCTGCTGACAGTAATAAACTGCAAAATCTTCAGGCT77810.11214142415717382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)