FastQCFastQC Report
Fri 10 May 2024
EGAF00008115908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7100661
Total Bases773.9 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC114160.16077376458332543No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC105300.14829605300126283No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG103750.14611315763419772No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC86730.122143558184231No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)