FastQCFastQC Report
Wed 8 May 2024
EGAF00008115909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6014913
Total Bases655.6 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC244500.40648966992540037No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC187890.3123735954285623No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC149820.24908090939968708No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG103270.17168993134231533No Hit
ACAGGCCATGTCTTGCAAGTCTATGTTTGGGTTCATTTTTCTTTGCATAA94400.156943250883263No Hit
CGGCCCCCCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG93570.15556334730028515No Hit
ATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTG92750.15420006906168052No Hit
CGGCCCCCCATTGGAGCAGCAAGAGGCTGGGAAGCCATCACTTACCTTGC90640.15069212139892962No Hit
CCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAAC86610.14399210761651915No Hit
GTACTCGTAGGTTCAGTACCATTGGTGGCCAATTGATTTGATGGTAAGGG69250.11513050978459705No Hit
GGGCCACTTTTGGTAAGCAGAACTGGCGCTGCGGGATGAACCGAACGCCG63390.10538805798188601No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT62980.10470641886258371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)