FastQCFastQC Report
Fri 10 May 2024
EGAF00008115912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4814528
Total Bases524.7 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC157600.3273425764685552No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC130030.27007839605460804No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC94930.1971740531989844No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG71300.14809343719675117No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT66930.13901674265888578No Hit
TAGAGCGTCACATCATTCCACTCCCAGGTGTCGATGTGATCGTTGCTTAT61270.12726065774256584No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG57670.11978328924455316No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG54820.11386370585029311No Hit
GGGCAGCAGGAGCAGCAGCTTTTCTTGCAGGAGGTGCATTTGCACTCTTT48390.10050829489412047No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)