FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008115913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6989687
Sequences flagged as poor quality0
Sequence length109
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCC805451.1523405840633494No Hit
TGGCTTGAAGCTCCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCA581520.8319685845732434No Hit
AGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCC431990.6180391196343985No Hit
AGGCACTGTGTGGCCGGCAGGGTCAGCTGGCTGCTCGTGGTGTACAGGTC312200.44665805493150124No Hit
CGGCAAGTCCGTGACATGCCACGTGAAGCACTACACGAATCCCAGCCAGG189980.2718004397049539No Hit
AAAATGGAGAGCCTCTCAAGAAAAAGAGCTATGCAGTCAGCAATGACTTA181850.2601690175826185No Hit
TGGCTTGGAGCTCCTCAGAGGAGGGCGGGAACAGAGTGACAGTGGGGTTG175980.2517709305152005No Hit
AGGCTGAGGTGCCAGACTTGGAGCCAGAGAATCGGTCAGGGACCCCTGAG141150.20194037300954965No Hit
TGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTC84070.12027720268446926No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG82550.11810257025815318No Hit
TGGCGGGTCCAGGAGATGGTCACGCTGTCATAGGTGGTCAGGTCTGTGAC80670.11541289330981488No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)