FastQCFastQC Report
Fri 10 May 2024
EGAF00008115914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6989687
Total Bases761.8 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCC505730.7235374058952854No Hit
TGGCTTGAAGCTCCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCA437900.6264944338709302No Hit
AGGCACTGTGTGGCCGGCAGGGTCAGCTGGCTGCTCGTGGTGTACAGGTC273780.39169135899790647No Hit
AGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCC217950.3118165377076255No Hit
AAAATGGAGAGCCTCTCAAGAAAAAGAGCTATGCAGTCAGCAATGACTTA167390.23948139594805892No Hit
TGGCTTGGAGCTCCTCAGAGGAGGGCGGGAACAGAGTGACAGTGGGGTTG130460.18664641206394506No Hit
CGGCAAGTCCGTGACATGCCACGTGAAGCACTACACGAATCCCAGCCAGG117070.16748961720317376No Hit
AGGCTGAGGTGCCAGACTTGGAGCCAGAGAATCGGTCAGGGACCCCTGAG100840.14426969333533818No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG94600.1353422549536195No Hit
TGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTC75390.10785890698682214No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)