FastQCFastQC Report
Fri 10 May 2024
EGAF00008115915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5370376
Total Bases585.3 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCGATCGCCGCAGATCCAGCGCCCAGAGAGACACCAGAGAACC91210.16983913230656478No Hit
CGGCCCCCCGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCA89320.1663198256509414No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC83980.1563763877985452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)