FastQCFastQC Report
Wed 8 May 2024
EGAF00008115916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5370376
Total Bases585.3 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCGATCGCCGCAGATCCAGCGCCCAGAGAGACACCAGAGAACC85650.15948603971118594No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68510.1275702110988132No Hit
CGGCCCCCCGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCA61690.11487091406635215No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)