FastQCFastQC Report
Fri 10 May 2024
EGAF00008115921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6521409
Total Bases710.8 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCTGGCAATGATAACACAAAATATTCACAGAACTTCCAGGGCAGAGTC826851.2679008478075828No Hit
ATCCATCCCATCAACTCAAGCCTTTGTCCGGGGGCCTGGCGCACCCAATG787461.207499790306052No Hit
TGGCGGGTCCAGGAGATGGTCACGCTGTCATAGGTGGTCAGGTCTGTGAC578660.8873235829864373No Hit
TGGCGAAGCTGTGAAAACCCACACCAACATCTCCGAGAGCCACCCCAATG347810.5333356641179843No Hit
CGGCCCCCCAACAACCACATCCCTCCTCAGAAGCCCCCAGAGCACAACTC264540.4056485339287875No Hit
AGGAGAAAGTGATGGAGTCGGGAAGGAAGTCCTGTGCGAGGCAGCCAACG232720.3568553973535474No Hit
CGGCCCCCCGGAGGAACTGCTCAGTTAGGACCCAGACGGAACCATGGAAG172450.2644367191200552No Hit
TCCATCCCATCAACTCAAGCCTTTGTCCGGGGGCCTGGCGCACCCAATGC140430.2153369003538959No Hit
ACGCTGGCAATGATAACACAACATATTCACAGAACTTCCAGGGCAGAGTC132120.20259425532120437No Hit
CGGCCCCCCACACATCCGCGAGCACGGCCTACATGGAGCTGAGCAGCCTG131810.20211889792527965No Hit
CGGCCCCCCACCCAACAACCACATCCCTCCTCAGAAGCCCCCAGAGCACA128650.19727331930875674No Hit
CGGCCCCCCGAGGAACTGCTCAGTTAGGACCCAGACGGAACCATGGAAGC128320.1967672936937401No Hit
AACGCTGGCAATGATAACACAAAATATTCACAGAACTTCCAGGGCAGAGT114320.17529954032939812No Hit
AAAATGGAGAGCCTCTCAAGAAAAAGAGCTATGCAGTCAGCAATGACTTA104960.16094681379438094No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC104740.16060946338436985No Hit
CGGCCCCCCGAACCACATCCCTCCTCAGAAGCCCCCAGAGCACAACTCCT99580.15269706285865525No Hit
GGGCCACCACGCAGGTGTAGGTCTCCCCCGTGTTCCATTCCTCTTCGGAC98260.1506729603985887No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT82800.1269664270405368No Hit
CGGCCCCCCGACACATCCGCGAGCACGGCCTACATGGAGCTGAGCAGCCT76870.11787330007978337No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC75260.11540450844288405No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC72490.11115696009865353No Hit
CGGCCCCCCGACCCAACAACCACATCCCTCCTCAGAAGCCCCCAGAGCAC65230.10002439656828761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)