FastQCFastQC Report
Fri 10 May 2024
EGAF00008115922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6521409
Total Bases710.8 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCATCCCATCAACTCAAGCCTTTGTCCGGGGGCCTGGCGCACCCAATG663001.0166514628970518No Hit
ACGCTGGCAATGATAACACAAAATATTCACAGAACTTCCAGGGCAGAGTC492180.7547142036329879No Hit
TGGCGGGTCCAGGAGATGGTCACGCTGTCATAGGTGGTCAGGTCTGTGAC462000.708435861023285No Hit
CGGCCCCCCAACAACCACATCCCTCCTCAGAAGCCCCCAGAGCACAACTC222310.34089258931620453No Hit
TGGCGAAGCTGTGAAAACCCACACCAACATCTCCGAGAGCCACCCCAATG204670.3138432200771336No Hit
AGGAGAAAGTGATGGAGTCGGGAAGGAAGTCCTGTGCGAGGCAGCCAACG177700.27248712663168345No Hit
CGGCCCCCCGGAGGAACTGCTCAGTTAGGACCCAGACGGAACCATGGAAG151850.23284845345538058No Hit
TCCATCCCATCAACTCAAGCCTTTGTCCGGGGGCCTGGCGCACCCAATGC127400.19535655561551193No Hit
CGGCCCCCCACCCAACAACCACATCCCTCCTCAGAAGCCCCCAGAGCACA112550.17258540293976346No Hit
CGGCCCCCCACACATCCGCGAGCACGGCCTACATGGAGCTGAGCAGCCTG111550.1710519919851676No Hit
CGGCCCCCCGAGGAACTGCTCAGTTAGGACCCAGACGGAACCATGGAAGC111310.1706839733560646No Hit
AAAATGGAGAGCCTCTCAAGAAAAAGAGCTATGCAGTCAGCAATGACTTA95820.14693143766937483No Hit
GGGCCACCACGCAGGTGTAGGTCTCCCCCGTGTTCCATTCCTCTTCGGAC90920.13941772399185512No Hit
ACGCTGGCAATGATAACACAACATATTCACAGAACTTCCAGGGCAGAGTC83320.12776380073692664No Hit
CGGCCCCCCGAACCACATCCCTCCTCAGAAGCCCCCAGAGCACAACTCCT83250.12765646197010494No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80350.12320957020177696No Hit
AACGCTGGCAATGATAACACAAAATATTCACAGAACTTCCAGGGCAGAGT78720.1207101103457857No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC70720.10844282270901885No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT65820.10092910903149917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)