FastQCFastQC Report
Wed 8 May 2024
EGAF00008115923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7191578
Total Bases783.8 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC485930.67569315107199No Hit
TGGCCTCCAAAGCATGTGCAGGAGCAAATGGCACCGAGATATTCCTTCTG143600.19967801225266557No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC135480.1883870271587126No Hit
CGGCCCCCCAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAA130110.18091995943032252No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC88920.1236446298712188No Hit
AGATACTCGCCCAGCCCAGCCTCCGGGCCACCCAGCCTGTGGAGGTTGGT85940.1195008939623543No Hit
CTTGGCCTCCTCGTCAGGCACACTGTTCTGGGCATTCACCTCCACCTGGT77030.10711140169793056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)