FastQCFastQC Report
Fri 10 May 2024
EGAF00008115925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5250049
Total Bases572.2 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTGGGTAACGACCACATCTACAACGTTATCGTCACAGCCC135820.25870234734951997No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC98450.18752205931792254No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT94770.18051260093001037No Hit
AGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTA85640.1631222870491304No Hit
TGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTC76410.14554149875553543No Hit
GGGCCACTTTTGGTAAGCAGAACTGGCGCTGCGGGATGAACCGAACGCCG63520.12098934695657125No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC63190.12036078139461175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)