FastQCFastQC Report
Wed 8 May 2024
EGAF00008115926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5250049
Total Bases572.2 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTGGGTAACGACCACATCTACAACGTTATCGTCACAGCCC91390.1740745657802432No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC75100.14304628394896887No Hit
AGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTA72260.1376368106278627No Hit
TGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTC62600.11923698235959321No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61780.11767509217533018No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT58430.1112941993493775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)