FastQCFastQC Report
Fri 10 May 2024
EGAF00008115928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6622462
Total Bases721.8 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG272480.4114481895101852No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC165990.2506469648296963No Hit
CGGCCCCCCAAGGAGGCAGGCAAGACAGCAAGGCATAGAGACAACATAGA126190.1905484697382937No Hit
CGGCCCCCCGAAGGAGGCAGGCAAGACAGCAAGGCATAGAGACAACATAG119430.18034078564739217No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC111730.1687136898633771No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC87330.13186938634000467No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT67380.10174463817232927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)