FastQCFastQC Report
Wed 8 May 2024
EGAF00008115929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008115929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5867138
Total Bases639.5 Mbp
Sequences flagged as poor quality0
Sequence length109
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC260490.4439813755872113No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC131680.2244365140209758No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG100220.17081582195612238No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC96440.16437315774744005No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT90110.1535842518106784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)