FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008116039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008116039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13306968
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATTACCGATCTCGTAT597970.4493660764796308TruSeq Adapter, Index 9 (97% over 38bp)
CCTTAACCTGGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGTC277300.20838706458150344No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATTACCGATCGCGTAT192040.144315369211078TruSeq Adapter, Index 9 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)