FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008116363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008116363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14182858
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGGTTCGAATCTCGGTT332060.23412770543144407TruSeq Adapter, Index 14 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGGTTCGAATCTCGGGT214590.15130236797125093TruSeq Adapter, Index 14 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGGTTCGAATCTCGTTT165730.11685232976315493TruSeq Adapter, Index 14 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)