FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008116377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008116377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14160032
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTGTAGCATCTCGTAT2627581.8556313997030516TruSeq Adapter, Index 12 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTGTAGCATCGCGTAT627350.44304278408410375TruSeq Adapter, Index 12 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)