FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008116421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008116421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15827035
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTAGGCATATCTCGTAT609140.3848730984672745TruSeq Adapter, Index 3 (97% over 41bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTAGGCATATCGCGTAT215390.1360899246131698TruSeq Adapter, Index 3 (97% over 41bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)