FastQCFastQC Report
Wed 8 May 2024
EGAF00008118644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008118644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124144
Total Bases37.3 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG91217.347113030029644No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG90527.291532413970872No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG69775.620086351333935No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG63555.119055290630236No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG60544.876594922026034No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG54564.39489624951669No Hit
GACTACAGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG48763.9276968681531126No Hit
GACTACACGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG45243.6441551746359067No Hit
GACTACAAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG40273.2438136357778062No Hit
GACTACTCGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC14281.150277097564119No Hit
GACTACTGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC13251.0673089315633457No Hit
GACTACTAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC11590.9335932465523907No Hit
GACTACCCGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC8930.7193259440649569No Hit
GACTACCGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC8790.7080487176182498No Hit
GACTACCAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC8320.6701894574043047No Hit
GACTACAGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC6620.5332517076942905No Hit
GACTACACGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC6440.5187524165485243No Hit
GACTACAAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC6420.5171413841989947No Hit
GACTACTCGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA4750.3826201830132749No Hit
GACTACTGGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA3930.3165678566825622No Hit
GACTACTAGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA3770.3036795978863256No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG3390.27306998324526355No Hit
GACTACTGGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG3190.25695965974996776No Hit
GACTACCCGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA3140.25293207887614383No Hit
GACTACCAGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA2890.2327941745070241No Hit
GACTACTCGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2810.2263500451089058No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2720.2191003995360227No Hit
GACTACTAGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2570.20701765691455085No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2510.2021845598659621No Hit
GACTACCGGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA2420.194934914293079No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2360.19010181724449027No Hit
GACTACCGGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2230.179630106972548No Hit
GACTACAAGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA2190.17640804227348886No Hit
GACTACCAGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2150.1731859775744297No Hit
GACTACAGGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA1950.1570756540791339No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG1940.15627013790436914No Hit
GACTACCCGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1760.1417708467586029No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG1740.14015981440907332No Hit
GACTACACGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA1700.13693774971001418No Hit
GACTACAGGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG1700.13693774971001418No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG1690.1361322335352494No Hit
GACTACAGGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1690.1361322335352494No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG1650.13291016883619022No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAG1570.12646603943807191No Hit
GACTACACGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG1560.12566052326330712No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAC1500.1208274262147184No Hit
GACTACTCGGGTATCTAATCCCAAGTCTACACATCTGACGCTGCCGACGA1470.11841087769042402No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAC1410.11357778064183528No Hit
GACTACACGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1410.11357778064183528No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG1360.10955019976801135No Hit
GACTACTGGGGTATCTAATCCCAAGTCTACACATCTGACGCTGCCGACGA1310.10552261889418739No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG1270.10230055419512825No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)