FastQCFastQC Report
Wed 8 May 2024
EGAF00008118805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008118805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences232802
Total Bases70 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC56

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT3398214.596953634418949No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT2744611.789417616687142No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT2330710.011511928591679No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT223569.60301028341681No Hit
CCTACGGGCGGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT197818.496920129552151No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT142076.102610802312695No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT120435.173065523492066No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT112154.81739847595811No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT28321.2164843944639652No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT21410.9196656386113521No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT19550.839769417788507No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT18310.7865052705732768No Hit
CCTACGGGCGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT16320.7010249052843188No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT11930.5124526421594315No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT10010.4299791238906882No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT8980.38573551773610193No Hit
CCTATGGGTGGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT8910.38272867071588734No Hit
CCTATGGGGGGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT8400.3608216424257524No Hit
CCTATGGGTGGCAGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT6320.271475330967947No Hit
CCTATGGGGGGCAGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT5930.25472289756960853No Hit
CCTATGGGCGGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT5390.23152722055652442No Hit
CCTACGGGGGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGATG3530.15163099973367924No Hit
CCTATGGGCGGCAGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT3520.1512014501593629No Hit
CCTATGGGAGGCAGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT3400.14604685526756642No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGAT3240.13917406207850447No Hit
CCTATGGGAGGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT3050.1310126201664934No Hit
CCTACGGGGTGCTGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGAT2930.12585802527469694No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGAT2750.11812613293700226No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT2740.11769658336268587No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGAT2410.1035214474102456No Hit
CCTACGGGGGCAGCAGTGGGGAATATTGCACAATGGGTGGAAGCCTGATG2350.10094414996434738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)