FastQCFastQC Report
Wed 8 May 2024
EGAF00008118948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008118948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144632
Total Bases43.5 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG102777.105619779855081No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG95776.621632833674429No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG74905.178660324132972No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG73985.115050611206372No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG65744.545328834559434No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG58394.037142541069749No Hit
GACTACAGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG56063.876044028983904No Hit
GACTACACGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG49003.387908623264561No Hit
GACTACAAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG43583.013164444936114No Hit
GACTACTCGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC18221.2597488799159247No Hit
GACTACTGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC16521.1422091929863378No Hit
GACTACTAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC14360.992864649593451No Hit
GACTACCCGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC12130.8386802367387578No Hit
GACTACCGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC11180.7729962940428121No Hit
GACTACCAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC11060.7646993749654295No Hit
GACTACAGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC8830.6105149621107362No Hit
GACTACACGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC8280.5724874163393994No Hit
GACTACAAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC7860.5434481995685603No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG3690.2551302616295149No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG3570.24683334255213232No Hit
GACTACTGGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2780.1922119586260302No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2730.1887549090104541No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG2590.17907517008684107No Hit
GACTACTCGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2500.17285248077880414No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG2480.1714696609325737No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2430.16801261131699763No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG2300.15902428231649982No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTTCCTCAG2260.15625864262403893No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAG2230.1541844128546933No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG2200.15211018308534766No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2040.1410476243155042No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAG1990.1375905746999281No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTTCCTCAG1980.13689916477681288No Hit
GACTACAGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG1960.13551634493058246No Hit
GACTACTAGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA1950.13482493500746723No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAG1910.13205929531500638No Hit
GACTACTAGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1900.13136788539189115No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG1880.12998506554566072No Hit
GACTACACGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG1870.1292936556225455No Hit
GACTACTCGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA1850.12791083577631507No Hit
GACTACCGGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1820.12583660600696941No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG1770.12237955639139333No Hit
GACTACCCGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1710.11823109685270203No Hit
GACTACCAGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1700.11753968692958681No Hit
GACTACTGGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA1670.11546545716024116No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAG1640.11339122739089551No Hit
GACTACAGGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1530.10578571823662813No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTTCCTCAG1530.10578571823662813No Hit
GACTACAAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG1520.10509430831351291No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAG1460.10094584877482161No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)