FastQCFastQC Report
Wed 8 May 2024
EGAF00008118972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008118972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences172109
Total Bases51.8 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG151938.827545334642581No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG139788.121597359812677No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG112076.511571155488673No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG110686.430808383059573No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG93385.425631431244153No Hit
GACTACAGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG85804.985212859292658No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG85334.9579045837231055No Hit
GACTACACGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG70754.11076701392722No Hit
GACTACAAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCCTCAG64383.740652725888826No Hit
GACTACTCGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC14470.8407462712583305No Hit
GACTACTGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC13570.7884538286783375No Hit
GACTACTAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC11260.654236559389689No Hit
GACTACCCGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC9740.5659204341434788No Hit
GACTACCGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC8900.5171141544021521No Hit
GACTACCAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC8320.4834145802950456No Hit
GACTACAGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC7490.43518932769349655No Hit
GACTACACGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC6630.3852209936726145No Hit
GACTACAAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC6620.3846399665328367No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG4380.25448988722263216No Hit
GACTACTGGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG4290.24926064296463285No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG3660.21265593315863782No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG3540.20568360748130543No Hit
GACTACTCGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG3490.20277847178241692No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG3250.18883382042775218No Hit
GACTACCGGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG3110.1806994404708644No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTTCCTCAG2920.16965992481508813No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTTCCTCAG2810.1632686262775334No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2680.15571527346042333No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG2640.15339116490131255No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2620.15222911062175715No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG2620.15222911062175715No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2610.15164808348197945No Hit
GACTACTAGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2480.14409473066486936No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2450.14235164924553625No Hit
GACTACCAGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2400.13944651354664775No Hit
GACTACCCGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2320.13479829642842617No Hit
GACTACAGGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG2290.1330552150090931No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTTCCTCAG2260.13131213358976No Hit
GACTACTGGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA2210.12840699789087148No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG2130.12375878077264989No Hit
GACTACAGGGGTATCTAATCCTGTTTGCTCCCCACGNTTTCGTGCCTCAG2030.11794850937487289No Hit
GACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG2000.1162054279555398No Hit
GACTACACGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCGCCTCAG1920.11155721083731822No Hit
GACTACTGGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG1870.10865207513842971No Hit
GACTACTCGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA1860.10807104799865201No Hit
GACTACCCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTTCCTCAG1840.10690899371909662No Hit
GACTACTCGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG1840.10690899371909662No Hit
GACTACACGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1840.10690899371909662No Hit
GACTACCGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTTCCTCAG1830.10632796657931891No Hit
GACTACTAGGGTATCTAATCCGCTATGTACACATCTGACGCTGCCGACGA1780.10342283088043043No Hit
GACTACTGGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGTGCCTCAG1770.10284180374065272No Hit
GACTACAAGGGTATCTAATCNTGTTTGCTCCCCACGCTTTCGTGCCTCAG1740.10109872232131963No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)