FastQCFastQC Report
Tue 8 Aug 2023
EGAF00008119437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008119437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57198
Sequences flagged as poor quality0
Sequence length301
%GC57

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT811414.185810692681564No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT588210.283576348823384No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT55929.776565614182314No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT54819.582502884716249No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT45297.918109024791077No Hit
CCTACGGGCGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT42457.421588167418442No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT35436.194272527011433No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT19963.4896325046330294No Hit
CATACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT3130.5472219308367425No Hit
ACTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT3090.5402286793244518No Hit
CCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGAC2760.48253435434805414No Hit
ACTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT2350.41085352634707506No Hit
CATACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT2180.38113220741983983No Hit
ACTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT2140.3741389559075492No Hit
CCTACGGGTGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGAC2050.3584041400048953No Hit
CCTACGGGGGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGAC1920.3356760725899507No Hit
CATACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT1880.32868282107766006No Hit
CCTACGGGCGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGAC1850.32343788244344207No Hit
CCTACGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGATG1850.32343788244344207No Hit
ACTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT1840.3216895695653694No Hit
ACTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT1810.31644463093115144No Hit
CATACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT1640.2867233120039162No Hit
CATACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT1580.27623343473548023No Hit
ACTACGGGCGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT1550.2709884961012623No Hit
ACTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT1410.24651211580824506No Hit
CCTACGGGGGGCTGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGAC1400.2447638029301724No Hit
CCTACGGGTGGCTGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGAC1350.2360222385398091No Hit
CATACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT1170.2045526067345012No Hit
CATACGGGCGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT1160.20280429385642856No Hit
CCTACGGGGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGATG1100.1923144165879926No Hit
CCTACGGGCGGCTGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGAC1030.18007622644148397No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGACTGAT980.1713346620511207No Hit
CCTACGGGAGGCTGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGAC830.14510996888003078No Hit
ACTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT830.14510996888003078No Hit
CCTAAGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT800.1398650302458128No Hit
CTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGATG730.12762684009930417No Hit
CTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGATG700.1223819014650862No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGACTGAT660.11538864995279555No Hit
CCTAAGGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT660.11538864995279555No Hit
CATACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGAT620.10839539844050491No Hit
CTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGATG620.10839539844050491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)