FastQCFastQC Report
Fri 4 Aug 2023
EGAF00008119528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008119528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences215483
Sequences flagged as poor quality0
Sequence length301
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTACTGGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG2413911.202275817581897No Hit
GACTACTCGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG2218010.293155376526222No Hit
GACTACCGGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG176848.206679877298907No Hit
GACTACTAGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG174578.101335140127064No Hit
GACTACCCGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG152007.053920726925093No Hit
GACTACAGGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG136886.3522412440888605No Hit
GACTACCAGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG136796.34806458050055No Hit
GACTACACGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG117785.465860415902879No Hit
GACTACAAGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAG103664.8105883062701No Hit
GACTACTCGGGTATCTAATCNTGTTCGCTCCCCACGCTTTCGCTCCTCAG6120.28401312400514195No Hit
GACTACTGGGGTATCTAATCNTGTTCGCTCCCCACGCTTTCGCTCCTCAG6070.28169275534496924No Hit
GACTACTGGGGTATCTAATCCTGTTCGCTCCCCACGNTTTCGCTCCTCAG6030.279836460416831No Hit
GACTACTCGGGTATCTAATCCTGTTCGCTCCCCACGNTTTCGCTCCTCAG6010.27890831295276197No Hit
GACTACCGGGGTATCTAATCNTGTTCGCTCCCCACGCTTTCGCTCCTCAG4690.2176505803242019No Hit
GACTACTAGGGTATCTAATCCTGTTCGCTCCCCACGNTTTCGCTCCTCAG4310.20001577850688917No Hit
GACTACTAGGGTATCTAATCNTGTTCGCTCCCCACGCTTTCGCTCCTCAG4280.19862355731078551No Hit
GACTACCGGGGTATCTAATCCTGTTCGCTCCCCACGNTTTCGCTCCTCAG4180.19398281999044006No Hit
GACTACCCGGGTATCTAATCNTGTTCGCTCCCCACGCTTTCGCTCCTCAG3950.18330912415364553No Hit
GACTACTGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC3950.18330912415364553No Hit
GACTACTCGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC3710.17217135458481644No Hit
GACTACCCGGGTATCTAATCCTGTTCGCTCCCCACGNTTTCGCTCCTCAG3490.16196173248005644No Hit
GACTACCAGGGTATCTAATCNTGTTCGCTCCCCACGCTTTCGCTCCTCAG3490.16196173248005644No Hit
GACTACCAGGGTATCTAATCCTGTTCGCTCCCCACGNTTTCGCTCCTCAG3480.16149765874802188No Hit
GACTACAGGGGTATCTAATCNTGTTCGCTCCCCACGCTTTCGCTCCTCAG3310.15360840530343461No Hit
GACTACAGGGGTATCTAATCCTGTTCGCTCCCCACGNTTTCGCTCCTCAG3150.14618322559088187No Hit
GACTACACGGGTATCTAATCNTGTTCGCTCCCCACGCTTTCGCTCCTCAG3120.14479100439477824No Hit
GACTACTAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC2940.13643767721815642No Hit
GACTACAAGGGTATCTAATCNTGTTCGCTCCCCACGCTTTCGCTCCTCAG2880.13365323482594915No Hit
GACTACACGGGTATCTAATCCTGTTCGCTCCCCACGNTTTCGCTCCTCAG2870.1331891610939146No Hit
GACTACTCGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCTCCTCAG2850.1322610136298455No Hit
GACTACCCGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC2830.13133286616577644No Hit
GACTACCGGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC2790.12947657123763823No Hit
GACTACTAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCTCCTCAG2600.12065917032898187No Hit
GACTACTGGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCTCCTCAG2590.12019509659694733No Hit
GACTACAAGGGTATCTAATCCTGTTCGCTCCCCACGNTTTCGCTCCTCAG2390.1109136219562564No Hit
GACTACTCGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCGCCTCAG2390.1109136219562564No Hit
GACTACCAGGGTATCTAATCCGAAGACCTTCTTCCTCCACGCGGCGTCGC2270.10534473717184185No Hit
GACTACTGGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCGCCTCAG2210.1025602947796346No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)